PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676723342
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 209aa    MW: 23263.9 Da    PI: 9.7993
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676723342genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55.1e-056081223
               EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
               +C++Cgk F ++  L  H++ H
  676723342 60 ECQYCGKEFANSQALGGHQNAH 81
               7******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.6E-55785IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.44E-65786No hitNo description
PROSITE profilePS5015711.8015986IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010026Biological Processtrichome differentiation
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MSISPTMSRT GESSSGSSSE KTIKLFGFEL ISGNRSPEVT TADSVSSTNN TASFTAKRLE  60
CQYCGKEFAN SQALGGHQNA HKKERLKKKR LQLQARRASI GYYLTSHQQP LTTSFQRHYK  120
TPSYCAFSSM HVNNQMGVFN EDWSSMSSQI SFGNKDASQD LNEQSGEMSM MYGVRQNMIQ  180
FQRDLTSRSD SKRSIKSLDL QLGFAGDTA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417462.11e-116hypothetical protein EUTSA_v10008773mg
SwissprotQ392641e-109ZFP5_ARATH; Zinc finger protein 5
TrEMBLV4KDK61e-116V4KDK6_EUTSA; Uncharacterized protein
STRINGBra018438.1-P1e-111(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73252541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.11e-101zinc finger protein 5